Compare similarity measures - EBI_Expression_Atlas_KEGG


Figure 1. Left) Numbers of clusters. Middle) Average numbers of terms per cluster. Right) Concordance of clusterings from different similarity matrices. The definition of the concordance score can be found here.


Figure 2.Numbers of clusters.


Figure 3.Numbers of large clusters (size >= 5).


Figure 4.Proportion of the largest cluster.


Table 1. Details on individual datasets.

E-GEOD-101794_g2_g1 E-GEOD-10718_A-AFFY-44_g5_g6 E-GEOD-11285_A-AFFY-44_g3_g4 E-GEOD-11348_A-AFFY-44_g6_g3 E-GEOD-11408_A-AFFY-1_g1_g2
E-GEOD-11783_A-AFFY-44_g1_g2 E-GEOD-11886_A-AFFY-44_g3_g1 E-GEOD-11903_A-AFFY-37_g7_g10 E-GEOD-11903_A-AFFY-37_g7_g9 E-GEOD-12265_A-AFFY-44_g1_g4
E-GEOD-12773_A-AFFY-44_g1_g2 E-GEOD-12791_A-AFFY-33_g3_g1 E-GEOD-12791_A-AFFY-33_g3_g2 E-GEOD-13274_A-AFFY-44_g1_g3 E-GEOD-13637_A-AFFY-44_g1_g2
E-GEOD-13637_A-AFFY-44_g1_g9 E-GEOD-13637_A-AFFY-44_g5_g1 E-GEOD-13762_A-AFFY-44_g3_g2 E-GEOD-13887_A-AFFY-44_g3_g2 E-GEOD-13909_A-AFFY-44_g3_g4
E-GEOD-13987_A-AFFY-44_g5_g6 E-GEOD-1417_A-AFFY-33_g1_g2 E-GEOD-14580_A-AFFY-44_g2_g3 E-GEOD-15811_A-AFFY-44_g1_g2 E-GEOD-15811_A-AFFY-44_g1_g3
E-GEOD-15811_A-AFFY-44_g1_g4 E-GEOD-1615_A-AFFY-33_g6_g5 E-GEOD-16837_A-AFFY-44_g22_g11 E-GEOD-16837_A-AFFY-44_g22_g21 E-GEOD-16837_A-AFFY-44_g22_g29
E-GEOD-16837_A-AFFY-44_g22_g3 E-GEOD-16837_A-AFFY-44_g22_g4 E-GEOD-16879_A-AFFY-44_g13_g1 E-GEOD-16879_A-AFFY-44_g13_g10 E-GEOD-16879_A-AFFY-44_g13_g12
E-GEOD-17156_A-AFFY-37_g4_g10 E-GEOD-18791_A-AFFY-44_g11_g2 E-GEOD-18791_A-AFFY-44_g11_g6 E-GEOD-19018_A-AFFY-44_g1_g3 E-GEOD-19018_A-AFFY-44_g2_g4
E-GEOD-22278_A-AFFY-41_g5_g1 E-GEOD-22385_A-AFFY-37_g1_g2 E-GEOD-23764_A-AFFY-44_g4_g2 E-GEOD-23930_A-AGIL-28_g2_g4 E-GEOD-24592_A-AFFY-37_g1_g3
E-GEOD-24592_A-AFFY-37_g4_g3 E-GEOD-24592_A-AFFY-37_g6_g5 E-GEOD-26370_A-AFFY-37_g4_g3 E-GEOD-26656_A-AFFY-44_g3_g1 E-GEOD-26656_A-AFFY-44_g4_g2
E-GEOD-26834_A-AFFY-37_g1_g4 E-GEOD-28784_A-AFFY-33_g2_g1 E-GEOD-28784_A-AFFY-33_g2_g3 E-GEOD-29137_A-AFFY-44_g4_g3 E-GEOD-30531_A-AFFY-44_g4_g9
E-GEOD-32876_A-AFFY-44_g1_g2 E-GEOD-3307_A-AFFY-33_g1_g13 E-GEOD-33294_g1_g2 E-GEOD-34635_A-AFFY-44_g1_g5 E-GEOD-40613_A-AFFY-44_g4_g3
E-GEOD-40885_A-AFFY-44_g2_g1 E-GEOD-40986_A-AFFY-44_g2_g1 E-GEOD-4183_A-AFFY-44_g3_g2 E-GEOD-42619_A-AGIL-28_g8_g2 E-GEOD-44384_g1_g2
E-GEOD-44408_A-AFFY-37_g1_g3 E-GEOD-45757_A-AFFY-37_g19_g18 E-GEOD-45757_A-AFFY-37_g21_g20 E-GEOD-45757_A-AFFY-37_g37_g36 E-GEOD-45757_A-AFFY-37_g41_g40
E-GEOD-45757_A-AFFY-37_g43_g42 E-GEOD-45757_A-AFFY-37_g45_g44 E-GEOD-45757_A-AFFY-37_g5_g4 E-GEOD-4600_A-AFFY-44_g2_g1 E-GEOD-46538_A-AFFY-44_g3_g1
E-GEOD-48121_A-AFFY-37_g3_g2 E-GEOD-48258_A-AFFY-44_g3_g2 E-GEOD-48350_A-AFFY-44_g6_g2 E-GEOD-4883_A-AFFY-44_g1_g2 E-GEOD-49016_A-AGIL-28_g2_g3
E-GEOD-49284_A-AFFY-44_g13_g1 E-GEOD-49284_A-AFFY-44_g21_g25 E-GEOD-49284_A-AFFY-44_g21_g5 E-GEOD-49284_A-AFFY-44_g31_g35 E-GEOD-50693_A-AFFY-37_g1_g4
E-GEOD-50693_A-AFFY-37_g5_g4 E-GEOD-50694_A-AFFY-37_g5_g4 E-GEOD-51261_g3_g1 E-GEOD-51878_g1_g2 E-GEOD-52127_A-AFFY-44_g1_g2
E-GEOD-52471_A-AFFY-37_g4_g3 E-GEOD-52778_g4_g3 E-GEOD-5281_A-AFFY-44_g8_g2 E-GEOD-52989_A-AFFY-33_g1_g2 E-GEOD-53280_g2_g1
E-GEOD-53295_A-AGIL-28_g1_g2 E-GEOD-5370_A-AFFY-33_g2_g1 E-GEOD-5418_A-AFFY-33_g3_g4 E-GEOD-54846_g1_g2 E-GEOD-55048_g1_g2
E-GEOD-55123_g1_g2 E-GEOD-55235_A-AFFY-33_g1_g2 E-GEOD-55235_A-AFFY-33_g1_g3 E-GEOD-55510_A-AFFY-44_g1_g2 E-GEOD-56026_A-AFFY-44_g4_g1
E-GEOD-56678_A-AGIL-28_g5_g2 E-GEOD-56678_A-AGIL-28_g6_g3 E-GEOD-56681_A-AFFY-33_g6_g5 E-GEOD-56788_g2_g10 E-GEOD-56788_g2_g12
E-GEOD-56788_g2_g14 E-GEOD-56788_g2_g15 E-GEOD-56788_g2_g7 E-GEOD-5681_A-AFFY-37_g4_g3 E-GEOD-5741_A-AFFY-44_g1_g3
E-GEOD-57463_A-AFFY-44_g2_g1 E-GEOD-57494_g1_g3 E-GEOD-57494_g2_g5 E-GEOD-57896_g5_g7 E-GEOD-57896_g5_g9
E-GEOD-57896_g6_g8 E-GEOD-57945_g6_g3 E-GEOD-57945_g6_g5 E-GEOD-59089_g1_g3 E-GEOD-59765_g1_g2
E-GEOD-59765_g1_g3 E-GEOD-60052_g1_g2 E-GEOD-60340_g7_g4 E-GEOD-60424_g25_g26 E-GEOD-60424_g31_g32
E-GEOD-60590_g2_g1 E-GEOD-61130_g3_g2 E-GEOD-61141_g2_g1 E-GEOD-61141_g4_g3 E-GEOD-61966_g3_g5
E-GEOD-62673_A-AFFY-37_g6_g10 E-GEOD-62673_A-AFFY-37_g6_g12 E-GEOD-62673_A-AFFY-37_g6_g16 E-GEOD-62673_A-AFFY-37_g6_g17 E-GEOD-62673_A-AFFY-37_g6_g18
E-GEOD-62673_A-AFFY-37_g6_g21 E-GEOD-62673_A-AFFY-37_g6_g7 E-GEOD-62854_g2_g1 E-GEOD-63085_g4_g1 E-GEOD-63085_g4_g3
E-GEOD-65335_g2_g1 E-GEOD-66048_A-AFFY-37_g14_g16 E-GEOD-66048_A-AFFY-37_g4_g5 E-GEOD-6631_A-AFFY-1_g1_g2 E-GEOD-6691_A-AFFY-33_g5_g4
E-GEOD-6802_A-AFFY-37_g1_g3 E-GEOD-68919_g2_g1 E-GEOD-6907_A-AFFY-41_g1_g10 E-GEOD-6907_A-AFFY-41_g1_g7 E-GEOD-6907_A-AFFY-41_g1_g8
E-GEOD-69597_g4_g2 E-GEOD-69597_g4_g6 E-GEOD-7114_A-AFFY-1_g2_g1 E-GEOD-71595_g2_g1 E-GEOD-75797_g4_g3
E-GEOD-7835_A-AFFY-44_g1_g5 E-GEOD-8961_A-AFFY-44_g2_g6 E-GEOD-8977_A-AFFY-44_g1_g2 E-GEOD-95132_g1_g2 E-GEOD-9723_A-AFFY-33_g1_g2
E-MEXP-1014_A-AFFY-41_g5_g3 E-MEXP-1230_A-AFFY-44_g2_g1 E-MEXP-1230_A-AFFY-44_g2_g3 E-MEXP-1274_A-AFFY-37_g3_g1 E-MEXP-1274_A-AFFY-37_g4_g2
E-MEXP-1509_A-AFFY-37_g1_g2 E-MEXP-1509_A-AFFY-37_g1_g3 E-MEXP-1599_A-AFFY-44_g4_g3 E-MEXP-1601_A-AFFY-44_g3_g2 E-MEXP-2000_A-AFFY-33_g3_g2
E-MEXP-3521_A-AFFY-33_g4_g1 E-MEXP-3521_A-AFFY-33_g4_g3 E-MEXP-3521_A-AFFY-33_g8_g5 E-MEXP-3521_A-AFFY-33_g8_g7 E-MEXP-548_A-AFFY-33_g1_g2
E-MEXP-560_A-AFFY-37_g2_g1 E-MEXP-563_A-AFFY-44_g1_g4 E-MEXP-563_A-AFFY-44_g1_g5 E-MEXP-567_A-AFFY-37_g3_g2 E-MEXP-858_A-AFFY-44_g1_g5
E-MTAB-2746_A-AFFY-33_g1_g2 E-MTAB-2758_g3_g7 E-MTAB-2994_A-GEOD-16686_g3_g1 E-MTAB-3101_g2_g1 E-MTAB-3689_g4_g2
E-MTAB-3731_A-AFFY-33_g1_g10 E-MTAB-3731_A-AFFY-33_g1_g16 E-MTAB-3731_A-AFFY-33_g1_g24 E-MTAB-3731_A-AFFY-33_g2_g11 E-MTAB-3731_A-AFFY-33_g2_g17
E-MTAB-3731_A-AFFY-33_g34_g44 E-MTAB-3731_A-AFFY-33_g35_g45 E-MTAB-3731_A-AFFY-33_g35_g55 E-MTAB-3731_A-AFFY-33_g37_g47 E-MTAB-3731_A-AFFY-33_g37_g57
E-MTAB-3731_A-AFFY-33_g37_g67 E-MTAB-3731_A-AFFY-33_g39_g49 E-MTAB-3731_A-AFFY-33_g39_g59 E-MTAB-3731_A-AFFY-33_g39_g69 E-MTAB-3731_A-AFFY-33_g3_g18
E-MTAB-3731_A-AFFY-33_g3_g25 E-MTAB-3731_A-AFFY-33_g4_g12 E-MTAB-3731_A-AFFY-33_g4_g19 E-MTAB-3731_A-AFFY-33_g6_g21 E-MTAB-3731_A-AFFY-33_g6_g27
E-MTAB-3731_A-AFFY-33_g76_g105 E-MTAB-3731_A-AFFY-33_g76_g86 E-MTAB-3731_A-AFFY-33_g76_g95 E-MTAB-3731_A-AFFY-33_g77_g106 E-MTAB-3731_A-AFFY-33_g77_g87
E-MTAB-3731_A-AFFY-33_g77_g96 E-MTAB-3731_A-AFFY-33_g78_g97 E-MTAB-3731_A-AFFY-33_g7_g15 E-MTAB-3731_A-AFFY-33_g7_g22 E-MTAB-3731_A-AFFY-33_g7_g28
E-MTAB-3731_A-AFFY-33_g80_g109 E-MTAB-3731_A-AFFY-33_g80_g89 E-MTAB-3731_A-AFFY-33_g80_g99 E-MTAB-3731_A-AFFY-33_g82_g101 E-MTAB-3731_A-AFFY-33_g82_g111
E-MTAB-3731_A-AFFY-33_g8_g29 E-MTAB-3801_g2_g1 E-MTAB-454_A-AFFY-33_g17_g18 E-MTAB-4732_g2_g1 E-MTAB-4811_g2_g1
E-MTAB-5285_g4_g3 E-MTAB-5316_g3_g2 E-MTAB-5464_g5_g8 E-MTAB-5464_g6_g3 E-MTAB-5690_A-GEOD-16686_g4_g1
E-MTAB-5690_A-GEOD-16686_g5_g2 E-MTAB-5917_A-AFFY-44_g7_g2 E-MTAB-5917_A-AFFY-44_g7_g3 E-MTAB-5917_A-AFFY-44_g7_g4 E-MTAB-5917_A-AFFY-44_g7_g6
E-MTAB-6045_A-GEOD-16686_g15_g6 E-MTAB-6045_A-GEOD-16686_g16_g7 E-MTAB-6235_g5_g1 E-MTAB-6235_g5_g2 E-MTAB-6241_g6_g4
E-MTAB-6241_g6_g5 E-MTAB-6244_g2_g1 E-MTAB-6264_g3_g2 E-MTAB-6298_g12_g10 E-MTAB-6298_g9_g7
E-MTAB-6345_g1_g2 E-MTAB-6555_g1_g2 E-MTAB-6564_g4_g2 E-MTAB-6607_g2_g1 E-MTAB-6607_g2_g3
E-MTAB-6623_g5_g4 E-MTAB-6643_g2_g1 E-MTAB-6647_g11_g12 E-MTAB-6647_g3_g1 E-MTAB-6647_g4_g2
E-MTAB-6647_g8_g6 E-MTAB-6681_g3_g1 E-MTAB-6681_g6_g3 E-MTAB-6681_g6_g4 E-MTAB-6756_g1_g3
E-MTAB-6849_g2_g1 E-MTAB-7000_g1_g2 E-MTAB-7000_g3_g4 E-MTAB-7029_g3_g2 E-MTAB-7029_g6_g3
E-MTAB-7048_A-AFFY-44_g3_g11 E-MTAB-7143_g1_g2 E-MTAB-7232_g3_g1 E-MTAB-7232_g4_g2 E-MTAB-7294_g8_g4
E-MTAB-7433_g2_g1 E-MTAB-7555_A-AFFY-44_g2_g8 E-MTAB-7773_g2_g1 E-MTAB-7773_g3_g1 E-MTAB-7773_g4_g3
E-MTAB-7803_g2_g6 E-MTAB-7803_g4_g2 E-MTAB-7841_g5_g6 E-MTAB-7841_g9_g2 E-MTAB-7841_g9_g5
E-MTAB-7841_g9_g6 E-MTAB-7847_g6_g5 E-MTAB-7860_g1_g4 E-MTAB-7860_g2_g6 E-MTAB-7860_g4_g3
E-MTAB-8008_g3_g1 E-MTAB-8008_g3_g2 E-MTAB-8052_g3_g1 E-MTAB-8198_g2_g1 E-MTAB-8215_g1_g2
E-MTAB-8444_g11_g6 E-MTAB-8444_g15_g10 E-MTAB-8444_g15_g5 E-TABM-1118_A-AFFY-44_g2_g1 E-TABM-15_A-AFFY-33_g3_g2