Compare similarity measures - EBI_Expression_Atlas_MsigDB_C2_CGP


Figure 1. Left) Numbers of clusters. Middle) Average numbers of terms per cluster. Right) Concordance of clusterings from different similarity matrices. The definition of the concordance score can be found here.


Figure 2.Numbers of clusters.


Figure 3.Numbers of large clusters (size >= 5).


Figure 4.Proportion of the largest cluster.


Table 1. Details on individual datasets.

E-GEOD-101794_g2_g1 E-GEOD-10311_A-AFFY-44_g6_g4 E-GEOD-104288_g2_g1 E-GEOD-10718_A-AFFY-44_g4_g3 E-GEOD-10797_A-AFFY-37_g1_g3
E-GEOD-10927_A-AFFY-44_g2_g3 E-GEOD-11285_A-AFFY-44_g1_g2 E-GEOD-11324_A-AFFY-44_g1_g4 E-GEOD-11348_A-AFFY-44_g6_g3 E-GEOD-11428_A-AFFY-44_g3_g1
E-GEOD-11783_A-AFFY-44_g1_g2 E-GEOD-11791_A-AFFY-44_g3_g4 E-GEOD-11839_A-AFFY-44_g2_g1 E-GEOD-12265_A-AFFY-44_g1_g4 E-GEOD-12355_A-AFFY-44_g11_g12
E-GEOD-12355_A-AFFY-44_g4_g6 E-GEOD-12355_A-AFFY-44_g7_g8 E-GEOD-12355_A-AFFY-44_g7_g9 E-GEOD-12446_A-AFFY-44_g1_g4 E-GEOD-12452_A-AFFY-44_g2_g1
E-GEOD-12513_A-AFFY-44_g4_g3 E-GEOD-12886_A-AFFY-44_g1_g2 E-GEOD-12963_A-AFFY-44_g3_g1 E-GEOD-13637_A-AFFY-44_g5_g1 E-GEOD-13637_A-AFFY-44_g5_g3
E-GEOD-13763_A-AFFY-44_g3_g4 E-GEOD-13887_A-AFFY-44_g3_g2 E-GEOD-13987_A-AFFY-44_g5_g6 E-GEOD-14905_A-AFFY-44_g3_g2 E-GEOD-14995_A-AFFY-44_g1_g2
E-GEOD-16066_A-AFFY-44_g2_g1 E-GEOD-1615_A-AFFY-33_g6_g5 E-GEOD-16179_A-AFFY-44_g1_g4 E-GEOD-16837_A-AFFY-44_g22_g11 E-GEOD-16837_A-AFFY-44_g22_g21
E-GEOD-16837_A-AFFY-44_g22_g29 E-GEOD-16837_A-AFFY-44_g22_g3 E-GEOD-16837_A-AFFY-44_g22_g4 E-GEOD-17508_A-AFFY-44_g1_g2 E-GEOD-18105_A-AFFY-44_g1_g2
E-GEOD-18791_A-AFFY-44_g11_g2 E-GEOD-18791_A-AFFY-44_g11_g6 E-GEOD-19314_A-AFFY-44_g2_g4 E-GEOD-19639_A-AFFY-44_g2_g8 E-GEOD-20193_A-AFFY-44_g3_g1
E-GEOD-20602_A-AFFY-33_g1_g2 E-GEOD-21610_A-AFFY-44_g5_g1 E-GEOD-22139_A-AFFY-44_g6_g3 E-GEOD-22611_A-AFFY-44_g1_g6 E-GEOD-22611_A-AFFY-44_g2_g3
E-GEOD-22611_A-AFFY-44_g9_g4 E-GEOD-22779_A-AFFY-44_g4_g1 E-GEOD-23610_A-AFFY-44_g1_g2 E-GEOD-23764_A-AFFY-44_g4_g1 E-GEOD-23764_A-AFFY-44_g4_g2
E-GEOD-24849_A-AFFY-44_g4_g3 E-GEOD-25412_A-AFFY-141_g3_g2 E-GEOD-25746_A-AFFY-44_g2_g1 E-GEOD-26656_A-AFFY-44_g4_g2 E-GEOD-28542_A-AFFY-141_g4_g2
E-GEOD-28542_A-AFFY-141_g4_g3 E-GEOD-28542_A-AFFY-141_g8_g6 E-GEOD-28784_A-AFFY-33_g2_g1 E-GEOD-28877_A-AGIL-28_g2_g1 E-GEOD-29598_A-AFFY-37_g4_g3
E-GEOD-30448_A-AFFY-141_g1_g2 E-GEOD-31193_A-AFFY-44_g2_g5 E-GEOD-31455_A-AFFY-44_g2_g3 E-GEOD-31812_A-AFFY-141_g1_g2 E-GEOD-31986_A-AFFY-141_g1_g3
E-GEOD-32876_A-AFFY-44_g1_g2 E-GEOD-32924_A-AFFY-44_g3_g1 E-GEOD-3307_A-AFFY-33_g1_g7 E-GEOD-3307_A-AFFY-34_g14_g15 E-GEOD-3307_A-AFFY-34_g14_g20
E-GEOD-3307_A-AFFY-34_g14_g24 E-GEOD-3307_A-AFFY-34_g14_g25 E-GEOD-33294_g1_g2 E-GEOD-33552_A-AFFY-141_g9_g7 E-GEOD-33643_A-AFFY-44_g7_g1
E-GEOD-34635_A-AFFY-44_g1_g5 E-GEOD-34670_A-AFFY-33_g2_g1 E-GEOD-35006_A-AFFY-44_g2_g1 E-GEOD-35006_A-AFFY-44_g4_g3 E-GEOD-35006_A-AFFY-44_g6_g5
E-GEOD-36035_A-AFFY-141_g4_g2 E-GEOD-36076_A-AFFY-44_g3_g2 E-GEOD-36509_A-AFFY-141_g4_g6 E-GEOD-36761_g2_g1 E-GEOD-3678_A-AFFY-44_g1_g2
E-GEOD-37258_A-AFFY-44_g3_g2 E-GEOD-37571_A-AGIL-28_g18_g9 E-GEOD-37911_A-AFFY-141_g3_g1 E-GEOD-37911_A-AFFY-141_g3_g2 E-GEOD-39121_g1_g2
E-GEOD-39685_A-AFFY-141_g2_g1 E-GEOD-40750_A-AFFY-44_g2_g1 E-GEOD-40968_A-AFFY-44_g6_g5 E-GEOD-41322_A-AFFY-141_g1_g2 E-GEOD-41326_A-AFFY-44_g1_g2
E-GEOD-41364_A-AFFY-44_g3_g1 E-GEOD-41405_A-AFFY-141_g1_g6 E-GEOD-41405_A-AFFY-141_g1_g8 E-GEOD-41459_A-AFFY-44_g1_g2 E-GEOD-41663_A-AFFY-44_g6_g2
E-GEOD-41678_A-AFFY-141_g19_g18 E-GEOD-41678_A-AFFY-141_g22_g20 E-GEOD-41678_A-AFFY-141_g3_g2 E-GEOD-41678_A-AFFY-141_g8_g6 E-GEOD-41678_A-AFFY-141_g8_g7
E-GEOD-41745_g2_g1 E-GEOD-44097_A-AFFY-44_g4_g3 E-GEOD-44379_g2_g1 E-GEOD-44392_A-AFFY-141_g2_g1 E-GEOD-44392_A-AFFY-141_g4_g1
E-GEOD-44408_A-AFFY-37_g1_g3 E-GEOD-44596_A-AFFY-44_g2_g1 E-GEOD-45581_A-AGIL-28_g3_g1 E-GEOD-45581_A-AGIL-28_g3_g2 E-GEOD-45757_A-AFFY-37_g7_g6
E-GEOD-46513_g2_g1 E-GEOD-46538_A-AFFY-44_g3_g1 E-GEOD-46590_A-AFFY-141_g1_g2 E-GEOD-46665_g3_g2 E-GEOD-46687_A-AFFY-44_g3_g2
E-GEOD-47739_A-AFFY-141_g2_g1 E-GEOD-48258_A-AFFY-44_g3_g2 E-GEOD-48350_A-AFFY-44_g6_g2 E-GEOD-48433_A-AFFY-44_g161_g164 E-GEOD-48937_A-AFFY-141_g1_g3
E-GEOD-49016_A-AGIL-28_g2_g3 E-GEOD-49284_A-AFFY-44_g13_g1 E-GEOD-49284_A-AFFY-44_g21_g25 E-GEOD-49284_A-AFFY-44_g23_g27 E-GEOD-49284_A-AFFY-44_g31_g35
E-GEOD-49515_A-AFFY-44_g3_g2 E-GEOD-50572_A-AFFY-44_g4_g2 E-GEOD-50697_A-AFFY-44_g1_g2 E-GEOD-51005_g2_g1 E-GEOD-51258_A-AFFY-44_g1_g2
E-GEOD-51651_A-AFFY-44_g2_g1 E-GEOD-51704_A-AFFY-44_g10_g9 E-GEOD-52127_A-AFFY-44_g1_g2 E-GEOD-52143_A-AFFY-141_g4_g3 E-GEOD-52471_A-AFFY-37_g4_g3
E-GEOD-5281_A-AFFY-44_g8_g2 E-GEOD-53284_A-AFFY-141_g2_g1 E-GEOD-53295_A-AGIL-28_g1_g2 E-GEOD-53514_A-AFFY-141_g1_g2 E-GEOD-53514_A-AFFY-141_g1_g3
E-GEOD-53759_A-AFFY-141_g1_g2 E-GEOD-53965_A-AFFY-141_g2_g1 E-GEOD-54962_A-AFFY-141_g4_g3 E-GEOD-55282_g4_g5 E-GEOD-55510_A-AFFY-44_g1_g2
E-GEOD-56003_A-AFFY-141_g2_g1 E-GEOD-56235_g2_g1 E-GEOD-56517_A-AGIL-28_g3_g7 E-GEOD-56517_A-AGIL-28_g4_g8 E-GEOD-56579_A-AGIL-28_g1_g2
E-GEOD-56691_g4_g2 E-GEOD-56691_g4_g3 E-GEOD-56788_g2_g6 E-GEOD-56788_g2_g7 E-GEOD-56788_g2_g8
E-GEOD-56825_A-AFFY-141_g1_g3 E-GEOD-56825_A-AFFY-141_g1_g5 E-GEOD-57198_A-AFFY-141_g1_g2 E-GEOD-57494_g1_g3 E-GEOD-57935_A-AFFY-141_g7_g3
E-GEOD-58379_g1_g2 E-GEOD-58966_g2_g5 E-GEOD-58966_g3_g6 E-GEOD-59071_A-AFFY-141_g4_g1 E-GEOD-59234_A-AFFY-141_g4_g3
E-GEOD-59966_g1_g2 E-GEOD-60052_g1_g2 E-GEOD-60340_g7_g1 E-GEOD-60424_g25_g26 E-GEOD-60424_g31_g32
E-GEOD-60590_g2_g1 E-GEOD-60888_A-AFFY-44_g4_g3 E-GEOD-61141_g2_g1 E-GEOD-61141_g4_g3 E-GEOD-61705_A-AFFY-141_g2_g1
E-GEOD-62673_A-AFFY-37_g6_g13 E-GEOD-62673_A-AFFY-37_g6_g19 E-GEOD-63085_g4_g1 E-GEOD-64912_g1_g2 E-GEOD-65166_A-AFFY-141_g2_g1
E-GEOD-66493_A-AFFY-141_g2_g1 E-GEOD-66493_A-AFFY-141_g2_g3 E-GEOD-66493_A-AFFY-141_g2_g4 E-GEOD-6691_A-AFFY-33_g5_g4 E-GEOD-67898_g1_g2
E-GEOD-67920_A-AFFY-44_g1_g2 E-GEOD-69597_g4_g6 E-GEOD-71289_g8_g5 E-GEOD-71289_g8_g7 E-GEOD-71404_A-AFFY-44_g10_g1
E-GEOD-71404_A-AFFY-44_g10_g7 E-GEOD-71421_g2_g1 E-GEOD-7538_A-AFFY-44_g1_g2 E-GEOD-80060_A-AFFY-44_g1_g2 E-GEOD-81046_g6_g4
E-GEOD-8977_A-AFFY-44_g1_g2 E-GEOD-95132_g1_g2 E-GEOD-9723_A-AFFY-33_g1_g2 E-MEXP-1103_A-AFFY-44_g1_g3 E-MEXP-1216_A-AFFY-44_g1_g3
E-MEXP-1230_A-AFFY-44_g2_g1 E-MEXP-1372_A-AFFY-44_g4_g2 E-MEXP-1509_A-AFFY-37_g1_g3 E-MEXP-1958_A-AFFY-44_g4_g1 E-MEXP-2218_A-AFFY-44_g4_g2
E-MEXP-3025_A-AFFY-141_g3_g2 E-MEXP-3641_A-AFFY-44_g1_g2 E-MEXP-3777_A-AFFY-141_g1_g2 E-MEXP-3778_A-AFFY-141_g1_g2 E-MTAB-1900_A-AFFY-141_g7_g3
E-MTAB-2533_A-AFFY-141_g1_g2 E-MTAB-2581_A-AFFY-141_g3_g1 E-MTAB-2581_A-AFFY-141_g4_g2 E-MTAB-2610_A-AFFY-33_g2_g1 E-MTAB-3017_A-AGIL-28_g1_g2
E-MTAB-3082_A-AFFY-141_g3_g1 E-MTAB-3082_A-AFFY-141_g4_g2 E-MTAB-3295_A-AFFY-141_g1_g2 E-MTAB-3447_g4_g1 E-MTAB-3447_g5_g3
E-MTAB-3645_A-AFFY-141_g1_g5 E-MTAB-3645_A-AFFY-141_g2_g1 E-MTAB-3645_A-AFFY-141_g2_g6 E-MTAB-3645_A-AFFY-141_g3_g1 E-MTAB-3645_A-AFFY-141_g4_g8
E-MTAB-3645_A-AFFY-141_g6_g5 E-MTAB-3645_A-AFFY-141_g7_g5 E-MTAB-3689_g4_g2 E-MTAB-4023_A-AFFY-141_g2_g1 E-MTAB-4054_g1_g3
E-MTAB-4054_g2_g3 E-MTAB-4511_g2_g1 E-MTAB-4811_g2_g1 E-MTAB-4898_A-AFFY-141_g1_g2 E-MTAB-4902_g1_g2
E-MTAB-5121_A-MEXP-2183_g3_g6 E-MTAB-5219_A-AFFY-141_g1_g4 E-MTAB-5219_A-AFFY-141_g1_g5 E-MTAB-5219_A-AFFY-141_g1_g6 E-MTAB-5219_A-AFFY-141_g1_g9
E-MTAB-5231_A-AFFY-44_g2_g1 E-MTAB-5235_A-AFFY-44_g2_g1 E-MTAB-5262_A-AFFY-141_g4_g3 E-MTAB-5439_A-AFFY-141_g2_g1 E-MTAB-5464_g5_g8
E-MTAB-5464_g6_g3 E-MTAB-5690_A-GEOD-16686_g4_g1 E-MTAB-5690_A-GEOD-16686_g5_g2 E-MTAB-5783_g2_g1 E-MTAB-5873_g8_g1
E-MTAB-6045_A-GEOD-16686_g3_g7 E-MTAB-6045_A-GEOD-16686_g9_g5 E-MTAB-6087_g12_g11 E-MTAB-6087_g7_g6 E-MTAB-6087_g9_g8
E-MTAB-6235_g5_g1 E-MTAB-6235_g5_g2 E-MTAB-6264_g3_g2 E-MTAB-6345_g1_g2 E-MTAB-6491_A-AFFY-44_g2_g1
E-MTAB-6555_g1_g2 E-MTAB-6556_g1_g3 E-MTAB-6556_g2_g3 E-MTAB-6564_g4_g1 E-MTAB-6643_g2_g1
E-MTAB-6681_g3_g1 E-MTAB-6681_g4_g2 E-MTAB-6681_g6_g4 E-MTAB-6681_g6_g5 E-MTAB-6848_A-AFFY-141_g2_g4
E-MTAB-69_A-AFFY-44_g3_g1 E-MTAB-7000_g2_g4 E-MTAB-7029_g4_g1 E-MTAB-7029_g5_g2 E-MTAB-7029_g6_g3
E-MTAB-7029_g6_g5 E-MTAB-7061_g18_g11 E-MTAB-7061_g18_g13 E-MTAB-7061_g18_g14 E-MTAB-7061_g18_g3
E-MTAB-7061_g18_g4 E-MTAB-7061_g18_g6 E-MTAB-7061_g18_g9 E-MTAB-7143_g5_g3 E-MTAB-7169_A-MEXP-2320_g2_g1
E-MTAB-7185_g4_g1 E-MTAB-7294_g7_g3 E-MTAB-7294_g8_g6 E-MTAB-7498_g3_g1 E-MTAB-7498_g3_g2
E-MTAB-7555_A-AFFY-44_g2_g8 E-MTAB-7672_A-AFFY-141_g6_g5 E-MTAB-7737_A-AGIL-28_g3_g1 E-MTAB-7737_A-AGIL-28_g3_g2 E-MTAB-7803_g4_g2
E-MTAB-7841_g9_g2 E-MTAB-7841_g9_g6 E-MTAB-7860_g1_g4 E-MTAB-7860_g2_g6 E-MTAB-7884_g4_g1
E-MTAB-7884_g5_g2 E-MTAB-7938_g3_g2 E-MTAB-8214_g1_g2 E-MTAB-8243_g4_g2 E-MTAB-8444_g14_g9
E-MTAB-8572_g2_g1 E-TABM-1029_A-AFFY-44_g2_g1