Compare similarity measures - EBI_Expression_Atlas_MsigDB_C4_CGN


Figure 1. Left) Numbers of clusters. Middle) Average numbers of terms per cluster. Right) Concordance of clusterings from different similarity matrices. The definition of the concordance score can be found here.


Figure 2.Numbers of clusters.


Figure 3.Numbers of large clusters (size >= 5).


Figure 4.Proportion of the largest cluster.


Table 1. Details on individual datasets.

E-GEOD-104288_g2_g1 E-GEOD-10718_A-AFFY-44_g5_g6 E-GEOD-10797_A-AFFY-37_g1_g3 E-GEOD-10927_A-AFFY-44_g2_g3 E-GEOD-11324_A-AFFY-44_g1_g4
E-GEOD-11348_A-AFFY-44_g6_g3 E-GEOD-11352_A-AFFY-44_g1_g6 E-GEOD-11408_A-AFFY-1_g1_g2 E-GEOD-11428_A-AFFY-44_g3_g1 E-GEOD-11783_A-AFFY-44_g1_g2
E-GEOD-11791_A-AFFY-44_g3_g4 E-GEOD-11886_A-AFFY-44_g3_g1 E-GEOD-11903_A-AFFY-37_g7_g9 E-GEOD-11919_A-AFFY-44_g1_g2 E-GEOD-11919_A-AFFY-44_g1_g3
E-GEOD-12265_A-AFFY-44_g1_g4 E-GEOD-12355_A-AFFY-44_g11_g12 E-GEOD-12355_A-AFFY-44_g4_g6 E-GEOD-12355_A-AFFY-44_g7_g8 E-GEOD-12355_A-AFFY-44_g7_g9
E-GEOD-12446_A-AFFY-44_g1_g4 E-GEOD-12452_A-AFFY-44_g2_g1 E-GEOD-12773_A-AFFY-44_g1_g2 E-GEOD-12791_A-AFFY-33_g3_g1 E-GEOD-12791_A-AFFY-33_g3_g2
E-GEOD-12791_A-AFFY-33_g4_g2 E-GEOD-12963_A-AFFY-44_g3_g1 E-GEOD-13637_A-AFFY-44_g1_g9 E-GEOD-13637_A-AFFY-44_g5_g3 E-GEOD-13762_A-AFFY-44_g3_g2
E-GEOD-13763_A-AFFY-44_g1_g2 E-GEOD-13763_A-AFFY-44_g3_g2 E-GEOD-13887_A-AFFY-44_g3_g2 E-GEOD-1417_A-AFFY-33_g1_g2 E-GEOD-14580_A-AFFY-44_g2_g3
E-GEOD-15799_A-AFFY-44_g1_g2 E-GEOD-15811_A-AFFY-44_g1_g2 E-GEOD-15811_A-AFFY-44_g1_g3 E-GEOD-15811_A-AFFY-44_g1_g4 E-GEOD-16238_A-AFFY-44_g2_g1
E-GEOD-16879_A-AFFY-44_g13_g1 E-GEOD-16879_A-AFFY-44_g13_g10 E-GEOD-16879_A-AFFY-44_g13_g12 E-GEOD-17156_A-AFFY-37_g4_g10 E-GEOD-18105_A-AFFY-44_g1_g2
E-GEOD-18791_A-AFFY-44_g11_g2 E-GEOD-18791_A-AFFY-44_g11_g6 E-GEOD-19018_A-AFFY-44_g1_g3 E-GEOD-19018_A-AFFY-44_g2_g4 E-GEOD-19249_A-AFFY-37_g6_g5
E-GEOD-19639_A-AFFY-44_g7_g5 E-GEOD-19650_A-AFFY-44_g4_g2 E-GEOD-19650_A-AFFY-44_g4_g3 E-GEOD-20505_A-AFFY-44_g7_g4 E-GEOD-20505_A-AFFY-44_g7_g5
E-GEOD-21422_A-AFFY-44_g3_g1 E-GEOD-21422_A-AFFY-44_g3_g2 E-GEOD-22278_A-AFFY-41_g5_g1 E-GEOD-22385_A-AFFY-37_g1_g2 E-GEOD-22779_A-AFFY-44_g4_g3
E-GEOD-23610_A-AFFY-44_g1_g2 E-GEOD-23930_A-AGIL-28_g1_g2 E-GEOD-24592_A-AFFY-37_g1_g3 E-GEOD-24592_A-AFFY-37_g1_g5 E-GEOD-24592_A-AFFY-37_g2_g6
E-GEOD-25412_A-AFFY-141_g3_g1 E-GEOD-25412_A-AFFY-141_g3_g2 E-GEOD-25746_A-AFFY-44_g2_g1 E-GEOD-26370_A-AFFY-37_g4_g3 E-GEOD-26834_A-AFFY-37_g1_g4
E-GEOD-28542_A-AFFY-141_g4_g2 E-GEOD-28542_A-AFFY-141_g4_g3 E-GEOD-31193_A-AFFY-44_g2_g5 E-GEOD-31455_A-AFFY-44_g2_g3 E-GEOD-31812_A-AFFY-141_g1_g2
E-GEOD-31986_A-AFFY-141_g1_g3 E-GEOD-3307_A-AFFY-33_g1_g13 E-GEOD-3307_A-AFFY-34_g14_g20 E-GEOD-3307_A-AFFY-34_g14_g24 E-GEOD-3307_A-AFFY-34_g14_g25
E-GEOD-33294_g1_g2 E-GEOD-33552_A-AFFY-141_g9_g7 E-GEOD-34670_A-AFFY-33_g2_g1 E-GEOD-35006_A-AFFY-44_g4_g3 E-GEOD-36076_A-AFFY-44_g3_g2
E-GEOD-36761_g2_g1 E-GEOD-39685_A-AFFY-141_g2_g1 E-GEOD-40986_A-AFFY-44_g2_g1 E-GEOD-41364_A-AFFY-44_g3_g1 E-GEOD-41405_A-AFFY-141_g1_g3
E-GEOD-41405_A-AFFY-141_g1_g6 E-GEOD-41405_A-AFFY-141_g1_g7 E-GEOD-41586_g3_g1 E-GEOD-41663_A-AFFY-44_g6_g2 E-GEOD-41678_A-AFFY-141_g3_g2
E-GEOD-41678_A-AFFY-141_g8_g6 E-GEOD-4183_A-AFFY-44_g3_g2 E-GEOD-42781_A-AFFY-141_g2_g3 E-GEOD-43552_A-AFFY-44_g2_g1 E-GEOD-44379_g2_g1
E-GEOD-44384_g1_g2 E-GEOD-44392_A-AFFY-141_g2_g1 E-GEOD-44392_A-AFFY-141_g4_g1 E-GEOD-44408_A-AFFY-37_g1_g3 E-GEOD-44596_A-AFFY-44_g2_g1
E-GEOD-45581_A-AGIL-28_g3_g1 E-GEOD-45581_A-AGIL-28_g3_g2 E-GEOD-45757_A-AFFY-37_g11_g10 E-GEOD-45757_A-AFFY-37_g13_g12 E-GEOD-45757_A-AFFY-37_g17_g16
E-GEOD-45757_A-AFFY-37_g21_g20 E-GEOD-45757_A-AFFY-37_g23_g22 E-GEOD-45757_A-AFFY-37_g29_g28 E-GEOD-45757_A-AFFY-37_g37_g36 E-GEOD-45757_A-AFFY-37_g41_g40
E-GEOD-45757_A-AFFY-37_g43_g42 E-GEOD-45757_A-AFFY-37_g5_g4 E-GEOD-45757_A-AFFY-37_g7_g6 E-GEOD-4600_A-AFFY-44_g2_g1 E-GEOD-47739_A-AFFY-141_g2_g1
E-GEOD-48121_A-AFFY-37_g3_g2 E-GEOD-48350_A-AFFY-44_g6_g2 E-GEOD-48433_A-AFFY-44_g161_g162 E-GEOD-48433_A-AFFY-44_g161_g163 E-GEOD-48433_A-AFFY-44_g161_g164
E-GEOD-48786_A-AFFY-44_g2_g1 E-GEOD-4883_A-AFFY-44_g1_g2 E-GEOD-49284_A-AFFY-44_g21_g25 E-GEOD-49284_A-AFFY-44_g21_g5 E-GEOD-49515_A-AFFY-44_g3_g2
E-GEOD-50572_A-AFFY-44_g4_g2 E-GEOD-51005_g2_g1 E-GEOD-51261_g3_g1 E-GEOD-51878_g1_g2 E-GEOD-52471_A-AFFY-37_g4_g3
E-GEOD-5264_A-AFFY-44_g1_g2 E-GEOD-5264_A-AFFY-44_g1_g7 E-GEOD-5264_A-AFFY-44_g1_g8 E-GEOD-5281_A-AFFY-44_g8_g2 E-GEOD-53280_g2_g1
E-GEOD-5370_A-AFFY-33_g2_g1 E-GEOD-53965_A-AFFY-141_g2_g1 E-GEOD-5418_A-AFFY-33_g3_g4 E-GEOD-54962_A-AFFY-141_g4_g3 E-GEOD-55048_g1_g2
E-GEOD-55123_g1_g2 E-GEOD-55235_A-AFFY-33_g1_g2 E-GEOD-55235_A-AFFY-33_g1_g3 E-GEOD-56026_A-AFFY-44_g4_g1 E-GEOD-56678_A-AGIL-28_g5_g2
E-GEOD-56681_A-AFFY-33_g6_g5 E-GEOD-56691_g4_g2 E-GEOD-56691_g4_g3 E-GEOD-56788_g2_g15 E-GEOD-56788_g2_g6
E-GEOD-57945_g6_g3 E-GEOD-57945_g6_g5 E-GEOD-59089_g1_g3 E-GEOD-59251_g2_g4 E-GEOD-59765_g1_g2
E-GEOD-59765_g1_g3 E-GEOD-59765_g1_g4 E-GEOD-59966_g1_g2 E-GEOD-60052_g1_g2 E-GEOD-60340_g7_g4
E-GEOD-62673_A-AFFY-37_g6_g10 E-GEOD-62673_A-AFFY-37_g6_g12 E-GEOD-62673_A-AFFY-37_g6_g13 E-GEOD-62673_A-AFFY-37_g6_g14 E-GEOD-62673_A-AFFY-37_g6_g15
E-GEOD-62673_A-AFFY-37_g6_g16 E-GEOD-62673_A-AFFY-37_g6_g17 E-GEOD-62673_A-AFFY-37_g6_g18 E-GEOD-62673_A-AFFY-37_g6_g19 E-GEOD-62673_A-AFFY-37_g6_g21
E-GEOD-62673_A-AFFY-37_g6_g22 E-GEOD-62673_A-AFFY-37_g6_g7 E-GEOD-62854_g2_g1 E-GEOD-63085_g4_g1 E-GEOD-63085_g4_g3
E-GEOD-64912_g1_g2 E-GEOD-66048_A-AFFY-37_g14_g16 E-GEOD-6631_A-AFFY-1_g1_g2 E-GEOD-66493_A-AFFY-141_g2_g1 E-GEOD-6691_A-AFFY-33_g5_g4
E-GEOD-67898_g1_g2 E-GEOD-67920_A-AFFY-44_g1_g2 E-GEOD-6907_A-AFFY-41_g1_g10 E-GEOD-6907_A-AFFY-41_g1_g2 E-GEOD-6907_A-AFFY-41_g1_g3
E-GEOD-6907_A-AFFY-41_g1_g7 E-GEOD-6907_A-AFFY-41_g1_g8 E-GEOD-6907_A-AFFY-41_g1_g9 E-GEOD-69597_g4_g2 E-GEOD-69597_g4_g6
E-GEOD-7114_A-AFFY-1_g2_g1 E-GEOD-71289_g8_g7 E-GEOD-71595_g2_g1 E-GEOD-7216_A-AFFY-44_g1_g6 E-GEOD-7515_A-AFFY-44_g1_g2
E-GEOD-7835_A-AFFY-44_g1_g5 E-GEOD-81046_g6_g4 E-GEOD-8597_A-AFFY-44_g2_g1 E-GEOD-8961_A-AFFY-44_g2_g6 E-GEOD-8977_A-AFFY-44_g1_g2
E-GEOD-95132_g1_g2 E-GEOD-9649_A-AFFY-44_g2_g3 E-GEOD-9764_A-AFFY-44_g3_g1 E-MEXP-1014_A-AFFY-41_g5_g3 E-MEXP-1230_A-AFFY-44_g2_g3
E-MEXP-1274_A-AFFY-37_g3_g1 E-MEXP-1274_A-AFFY-37_g4_g2 E-MEXP-1372_A-AFFY-44_g4_g2 E-MEXP-1599_A-AFFY-44_g4_g3 E-MEXP-1601_A-AFFY-44_g3_g2
E-MEXP-2000_A-AFFY-33_g3_g2 E-MEXP-2115_A-AFFY-44_g2_g1 E-MEXP-231_A-AFFY-33_g2_g1 E-MEXP-3521_A-AFFY-33_g4_g1 E-MEXP-3521_A-AFFY-33_g4_g3
E-MEXP-3521_A-AFFY-33_g8_g5 E-MEXP-3521_A-AFFY-33_g8_g7 E-MEXP-3777_A-AFFY-141_g1_g2 E-MEXP-548_A-AFFY-33_g1_g2 E-MEXP-560_A-AFFY-37_g2_g1
E-MEXP-563_A-AFFY-44_g1_g4 E-MEXP-563_A-AFFY-44_g1_g5 E-MEXP-567_A-AFFY-37_g3_g2 E-MTAB-2581_A-AFFY-141_g3_g1 E-MTAB-2581_A-AFFY-141_g4_g2
E-MTAB-2610_A-AFFY-33_g2_g1 E-MTAB-2746_A-AFFY-33_g1_g2 E-MTAB-2758_g2_g6 E-MTAB-2758_g3_g7 E-MTAB-3017_A-AGIL-28_g1_g2
E-MTAB-3082_A-AFFY-141_g3_g1 E-MTAB-3082_A-AFFY-141_g4_g2 E-MTAB-3645_A-AFFY-141_g2_g1 E-MTAB-3645_A-AFFY-141_g6_g5 E-MTAB-3645_A-AFFY-141_g7_g5
E-MTAB-3689_g4_g2 E-MTAB-3731_A-AFFY-33_g1_g10 E-MTAB-3731_A-AFFY-33_g2_g11 E-MTAB-3731_A-AFFY-33_g2_g17 E-MTAB-3731_A-AFFY-33_g34_g44
E-MTAB-3731_A-AFFY-33_g35_g55 E-MTAB-3731_A-AFFY-33_g4_g12 E-MTAB-3731_A-AFFY-33_g4_g19 E-MTAB-3731_A-AFFY-33_g6_g21 E-MTAB-3731_A-AFFY-33_g77_g87
E-MTAB-3731_A-AFFY-33_g77_g96 E-MTAB-3731_A-AFFY-33_g78_g107 E-MTAB-3731_A-AFFY-33_g78_g88 E-MTAB-3731_A-AFFY-33_g78_g97 E-MTAB-3731_A-AFFY-33_g7_g15
E-MTAB-3731_A-AFFY-33_g7_g22 E-MTAB-3731_A-AFFY-33_g7_g28 E-MTAB-3731_A-AFFY-33_g80_g109 E-MTAB-3731_A-AFFY-33_g80_g89 E-MTAB-3731_A-AFFY-33_g80_g99
E-MTAB-3731_A-AFFY-33_g82_g101 E-MTAB-3731_A-AFFY-33_g82_g111 E-MTAB-3801_g2_g1 E-MTAB-4023_A-AFFY-141_g2_g1 E-MTAB-4054_g1_g3
E-MTAB-4054_g2_g3 E-MTAB-4511_g2_g1 E-MTAB-454_A-AFFY-33_g17_g18 E-MTAB-4732_g2_g1 E-MTAB-4811_g2_g1
E-MTAB-5121_A-MEXP-2183_g1_g5 E-MTAB-5121_A-MEXP-2183_g3_g6 E-MTAB-5231_A-AFFY-44_g2_g1 E-MTAB-5262_A-AFFY-141_g4_g3 E-MTAB-5285_g4_g3
E-MTAB-5316_g3_g2 E-MTAB-5464_g5_g8 E-MTAB-5464_g6_g3 E-MTAB-5690_A-GEOD-16686_g4_g1 E-MTAB-5690_A-GEOD-16686_g5_g2
E-MTAB-57_A-AFFY-33_g1_g2 E-MTAB-5917_A-AFFY-44_g7_g2 E-MTAB-5917_A-AFFY-44_g7_g6 E-MTAB-6008_A-MEXP-2320_g8_g4 E-MTAB-6045_A-GEOD-16686_g14_g5
E-MTAB-6045_A-GEOD-16686_g15_g6 E-MTAB-6045_A-GEOD-16686_g16_g7 E-MTAB-6045_A-GEOD-16686_g17_g8 E-MTAB-6045_A-GEOD-16686_g3_g7 E-MTAB-6045_A-GEOD-16686_g9_g5
E-MTAB-6087_g9_g8 E-MTAB-6235_g5_g1 E-MTAB-6235_g5_g2 E-MTAB-6241_g6_g4 E-MTAB-6244_g2_g1
E-MTAB-6264_g3_g2 E-MTAB-6298_g12_g10 E-MTAB-6298_g9_g7 E-MTAB-6298_g9_g8 E-MTAB-6485_g2_g1
E-MTAB-6555_g1_g2 E-MTAB-6598_g4_g3 E-MTAB-6623_g5_g1 E-MTAB-6623_g5_g2 E-MTAB-6623_g5_g3
E-MTAB-6643_g2_g1 E-MTAB-6647_g3_g1 E-MTAB-6647_g8_g6 E-MTAB-6681_g6_g3 E-MTAB-69_A-AFFY-44_g3_g1
E-MTAB-7000_g3_g4 E-MTAB-7029_g3_g2 E-MTAB-7029_g6_g3 E-MTAB-7061_g18_g13 E-MTAB-7079_g2_g1
E-MTAB-7169_A-MEXP-2320_g2_g1 E-MTAB-7232_g3_g1 E-MTAB-7232_g4_g2 E-MTAB-7294_g7_g3 E-MTAB-7294_g8_g4
E-MTAB-7294_g8_g6 E-MTAB-7433_g2_g1 E-MTAB-7773_g2_g1 E-MTAB-7773_g4_g3 E-MTAB-7841_g5_g6
E-MTAB-7847_g6_g5 E-MTAB-7860_g1_g4 E-MTAB-7860_g2_g6 E-MTAB-7860_g4_g3 E-MTAB-8008_g3_g1
E-MTAB-8052_g3_g1 E-MTAB-8198_g2_g1 E-MTAB-8215_g1_g2 E-MTAB-8444_g11_g6 E-MTAB-8444_g15_g10
E-MTAB-8444_g15_g5 E-TABM-1029_A-AFFY-44_g2_g1 E-TABM-1118_A-AFFY-44_g2_g1 E-TABM-15_A-AFFY-33_g3_g1 E-TABM-15_A-AFFY-33_g3_g2