Compare similarity measures - EBI_Expression_Atlas_MsigDB_C7_IMMUNESIGDB


Figure 1. Left) Numbers of clusters. Middle) Average numbers of terms per cluster. Right) Concordance of clusterings from different similarity matrices. The definition of the concordance score can be found here.


Figure 2.Numbers of clusters.


Figure 3.Numbers of large clusters (size >= 5).


Figure 4.Proportion of the largest cluster.


Table 1. Details on individual datasets.

E-GEOD-104288_g2_g1 E-GEOD-11285_A-AFFY-44_g1_g2 E-GEOD-11839_A-AFFY-44_g2_g1 E-GEOD-12446_A-AFFY-44_g1_g4 E-GEOD-12452_A-AFFY-44_g2_g1
E-GEOD-12513_A-AFFY-44_g4_g3 E-GEOD-16066_A-AFFY-44_g2_g1 E-GEOD-1615_A-AFFY-33_g6_g5 E-GEOD-1615_A-AFFY-34_g3_g2 E-GEOD-19314_A-AFFY-44_g2_g4
E-GEOD-20193_A-AFFY-44_g3_g1 E-GEOD-20602_A-AFFY-33_g1_g2 E-GEOD-21610_A-AFFY-44_g5_g1 E-GEOD-22611_A-AFFY-44_g1_g6 E-GEOD-22611_A-AFFY-44_g2_g3
E-GEOD-22611_A-AFFY-44_g9_g4 E-GEOD-24849_A-AFFY-44_g4_g3 E-GEOD-25746_A-AFFY-44_g2_g1 E-GEOD-26656_A-AFFY-44_g4_g2 E-GEOD-28542_A-AFFY-141_g8_g6
E-GEOD-29598_A-AFFY-37_g4_g3 E-GEOD-31812_A-AFFY-141_g1_g2 E-GEOD-31986_A-AFFY-141_g1_g3 E-GEOD-32924_A-AFFY-44_g3_g1 E-GEOD-3307_A-AFFY-33_g1_g7
E-GEOD-3307_A-AFFY-34_g14_g15 E-GEOD-3307_A-AFFY-34_g14_g20 E-GEOD-3307_A-AFFY-34_g14_g24 E-GEOD-3307_A-AFFY-34_g14_g25 E-GEOD-33294_g1_g2
E-GEOD-33643_A-AFFY-44_g7_g1 E-GEOD-33643_A-AFFY-44_g7_g5 E-GEOD-35006_A-AFFY-44_g2_g1 E-GEOD-35006_A-AFFY-44_g6_g5 E-GEOD-36509_A-AFFY-141_g4_g6
E-GEOD-36761_g2_g1 E-GEOD-3678_A-AFFY-44_g1_g2 E-GEOD-37258_A-AFFY-44_g3_g2 E-GEOD-37911_A-AFFY-141_g3_g1 E-GEOD-37911_A-AFFY-141_g3_g2
E-GEOD-39121_g1_g2 E-GEOD-40750_A-AFFY-44_g2_g1 E-GEOD-41322_A-AFFY-141_g1_g2 E-GEOD-41459_A-AFFY-44_g1_g2 E-GEOD-41678_A-AFFY-141_g8_g7
E-GEOD-41745_g2_g1 E-GEOD-44097_A-AFFY-44_g4_g3 E-GEOD-44379_g2_g1 E-GEOD-45581_A-AGIL-28_g3_g1 E-GEOD-45581_A-AGIL-28_g3_g2
E-GEOD-46513_g2_g1 E-GEOD-46590_A-AFFY-141_g1_g2 E-GEOD-46665_g3_g2 E-GEOD-46687_A-AFFY-44_g3_g2 E-GEOD-48350_A-AFFY-44_g6_g2
E-GEOD-50697_A-AFFY-44_g1_g2 E-GEOD-51005_g2_g1 E-GEOD-51258_A-AFFY-44_g1_g2 E-GEOD-52143_A-AFFY-141_g4_g3 E-GEOD-53284_A-AFFY-141_g2_g1
E-GEOD-53514_A-AFFY-141_g1_g2 E-GEOD-53965_A-AFFY-141_g2_g1 E-GEOD-54846_g1_g2 E-GEOD-55048_g1_g2 E-GEOD-55282_g4_g5
E-GEOD-56235_g2_g1 E-GEOD-56517_A-AGIL-28_g3_g7 E-GEOD-56517_A-AGIL-28_g4_g8 E-GEOD-56788_g2_g7 E-GEOD-57198_A-AFFY-141_g1_g2
E-GEOD-57935_A-AFFY-141_g7_g3 E-GEOD-58379_g1_g2 E-GEOD-58966_g3_g6 E-GEOD-59234_A-AFFY-141_g4_g3 E-GEOD-60052_g1_g2
E-GEOD-60590_g2_g1 E-GEOD-64912_g1_g2 E-GEOD-65166_A-AFFY-141_g2_g1 E-GEOD-67898_g1_g2 E-GEOD-71289_g8_g5
E-GEOD-71289_g8_g7 E-GEOD-71404_A-AFFY-44_g10_g1 E-GEOD-80060_A-AFFY-44_g1_g2 E-GEOD-81046_g6_g4 E-GEOD-95132_g1_g2
E-GEOD-9764_A-AFFY-44_g3_g2 E-MEXP-1216_A-AFFY-44_g1_g3 E-MEXP-3641_A-AFFY-44_g1_g2 E-MTAB-2533_A-AFFY-141_g1_g2 E-MTAB-2581_A-AFFY-141_g4_g2
E-MTAB-3082_A-AFFY-141_g4_g2 E-MTAB-3447_g4_g1 E-MTAB-3447_g5_g3 E-MTAB-3645_A-AFFY-141_g1_g5 E-MTAB-3645_A-AFFY-141_g2_g1
E-MTAB-3645_A-AFFY-141_g4_g8 E-MTAB-4054_g2_g3 E-MTAB-4511_g2_g1 E-MTAB-4902_g1_g2 E-MTAB-5121_A-MEXP-2183_g3_g6
E-MTAB-5219_A-AFFY-141_g1_g4 E-MTAB-5219_A-AFFY-141_g1_g6 E-MTAB-5219_A-AFFY-141_g1_g9 E-MTAB-5783_g2_g1 E-MTAB-5873_g8_g1
E-MTAB-5984_g4_g8 E-MTAB-6045_A-GEOD-16686_g11_g7 E-MTAB-6045_A-GEOD-16686_g17_g8 E-MTAB-6045_A-GEOD-16686_g3_g7 E-MTAB-6087_g12_g11
E-MTAB-6087_g7_g6 E-MTAB-6298_g9_g8 E-MTAB-6556_g1_g3 E-MTAB-6681_g3_g1 E-MTAB-6681_g4_g2
E-MTAB-6681_g6_g5 E-MTAB-6848_A-AFFY-141_g2_g4 E-MTAB-6849_g2_g1 E-MTAB-69_A-AFFY-44_g3_g1 E-MTAB-7000_g2_g4
E-MTAB-7029_g5_g2 E-MTAB-7061_g18_g11 E-MTAB-7061_g18_g13 E-MTAB-7061_g18_g14 E-MTAB-7061_g18_g4
E-MTAB-7061_g18_g6 E-MTAB-7169_A-MEXP-2320_g2_g1 E-MTAB-7294_g7_g3 E-MTAB-7498_g3_g1 E-MTAB-7672_A-AFFY-141_g6_g5
E-MTAB-7884_g4_g1 E-MTAB-7884_g5_g2 E-MTAB-7938_g3_g2 E-MTAB-8198_g2_g1 E-MTAB-8214_g1_g2
E-MTAB-8243_g4_g2 E-MTAB-8572_g2_g1